reinitialize
fetch 4v50


#AX=mRNA
#AA=16s rrna
#AU=bS21
#AW=tRNA

bg_color grey80
color grey
color red, chain AU
color br1, chain AX
color paleyellow, chain AW
#color br1, /4v50/C/AX/A`1
#color br3, /4v50/C/AX/U`6
hide all
show ribbon
hide ribbon, chain AU+AX+AW
hide ribbon, chain B:E
show surface, chain AU
show surface, chain AX
#show surface, chain AW

#solvent view (zoomed out)
#set_view (\
     0.290299505,    0.857956469,   -0.423835546,\
    -0.386746883,    0.510314465,    0.768119156,\
     0.875302970,   -0.059066989,    0.479955673,\
     0.000068128,   -0.000098057, -597.955993652,\
    97.565185547,    4.775234222,  -14.548835754,\
   471.433074951,  724.478942871,  -20.000000000 )

#   ray 1500, 1500
#   png C:\Users\hanna/Desktop/bS21_out.png

#close up view
#hide all
#show ribbon, chain AA
#show surface, chain AU
#show surface, chain AX
#show surface, chain AW
#set_view (\
     0.367161214,    0.899682581,   -0.236140400,\
    -0.250827491,    0.340230316,    0.906271458,\
     0.895697474,   -0.273516655,    0.350585461,\
     0.000178516,   -0.000314370, -334.270141602,\
    95.290214539,   37.574810028,  -46.419178009,\
    51.741737366,  616.784118652,  -20.000000000 )

#  ray 1500, 1500
#  png C:\Users\hanna/Desktop/bS21_in.png

#showing conserved residues in red and non-conserved in white

color salmon, chain AU
color red, chain AU and resi 1
color red, chain AU and resi 11
color red, chain AU and resi 12
color red, chain AU and resi 13
color red, chain AU and resi 16
color red, chain AU and resi 17
color red, chain AU and resi 19
color red, chain AU and resi 20
color red, chain AU and resi 21
color red, chain AU and resi 23
color red, chain AU and resi 24
color red, chain AU and resi 25
color red, chain AU and resi 26
color red, chain AU and resi 27
color red, chain AU and resi 31
color red, chain AU and resi 33
color red, chain AU and resi 35
color red, chain AU and resi 40
color red, chain AU and resi 41
color red, chain AU and resi 42
color red, chain AU and resi 45
color red, chain AU and resi 46
color red, chain AU and resi 49
color red, chain AU and resi 52

color white, chain AU and resi 2
color white, chain AU and resi 3
color white, chain AU and resi 5
color white, chain AU and resi 7
color white, chain AU and resi 8
color white, chain AU and resi 29
color white, chain AU and resi 30
color white, chain AU and resi 34
color white, chain AU and resi 39
color white, chain AU and resi 43
color white, chain AU and resi 44
color white, chain AU and resi 47
color white, chain AU and resi 48
color white, chain AU and resi 50
color white, chain AU and resi 51
color white, chain AU and resi 56
color white, chain AU and resi 57
color white, chain AU and resi 58
color white, chain AU and resi 60
color white, chain AU and resi 61
color white, chain AU and resi 62
color white, chain AU and resi 63
color white, chain AU and resi 64
color white, chain AU and resi 65
color white, chain AU and resi 66
color white, chain AU and resi 67
color white, chain AU and resi 68
color white, chain AU and resi 69
color white, chain AU and resi 70
color white, chain AU and resi 71

hide surface, chain AX
show cartoon, chain AX

set_view (\
     0.409570009,    0.365774870,    0.835735083,\
     0.896174908,    0.010045463,   -0.443588614,\
    -0.170649797,    0.930648267,   -0.323685169,\
     0.000158843,    0.000088930, -497.380981445,\
   -31.849052429,   60.055328369,  -28.048408508,\
   234.255279541,  760.376586914,  -20.000000000 )
